rs38822636 SNP Detail

Summary

• ID
  rs38822636
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:62748453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATCAATC AATCAATCAA
  TCAATCAATC AATCAATCAA CCAACCAACC AACCAATCAA TCATTCAACC TCTCTCTCCT
  TCTCTCCCTT CCTCCTTCCC TCCTTCCCAC CTCTGTCTGT CTGTCAGACT GACAGACTGA
  CAGACTGACT ATCTCCTTGT GCCTGAAGTG ACACCCTGTA GTAGAATAGA AATTAGGCTC
  R
  AGGTCTGTAT CATCAGCTTA AGCCTCTGTT CAGTCCATCT TGTAGCTAGT GGTATGTAAA
  GAAACGAGTG AGGCCCGCAA CTAGTGAAGC TTTTCTGTTT TCACGTACAG AGGAAACAAA
  GGGAAGATCT GGAAAACCAA ACTAAACAAA ACAAAACTAA CACTGACAAC CATAGAACGG
  AAAGGTGGAC CTCTGAGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50434338	NES13454876	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38822636					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50434338	NES13454876	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:62748453 () rs orientation: forward

Symbol	Name	Function Class
Spink10	serine peptidase inhibitor, Kazal type 10	within coordinates
Spink13	serine peptidase inhibitor, Kazal type 13	within coordinates
Tssr153633	transcription start site region 153633	294 bp downstream
Tssr153634	transcription start site region 153634	335 bp downstream
Tssr153635	transcription start site region 153635	360 bp downstream