rs38823047 SNP Detail

Summary

• ID
  rs38823047
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60939910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTCTCCA GCCCTTGGCT
  TAGGAAATAC AGAGGGTTGG CAAGCCAATG AGAATTAGCT GTGTCTGTGA TGTCATAAGT
  TACCAGGCAG ACAGGTTTTC TGGAGTTTCC TAAATTACCC TTCCTGGTTG CTGGAGTAGG
  CAGGATGCAA ACTTATCACG AGAATTTCCA ATGTAGTTCG TCTTACTTAG TCTGAGTCTG
  Y
  GTTACTATAA TAGAAAGCCA CAGACTGGGT CATTTATATA AATAATAATA AAATCTGGAG
  ATTTAGCCGG ACGTGGTGGC ACACGCCTTT AATCCCAGCA CTCGGGAGGC AGAGGCAGGC
  AGATTTCTGA GTTCGAGGCC AGCCTGGTCT ACAAAGTGAG TTCCAGGACA GCCAGGGATA
  TACCCCCTAC ATACACACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50416910	NES13460481	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	T		C	C		C
ss147250107	ENSMUSSNP4943745	ENSEMBL	ENSEMBL_Sanger	f	SNP		T				C
ss325640674	CHEV_18_60966492	CHEVERUD	SCREENING_POP	f	SNP								C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38823047					SNP	C	T	C	C	C	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50416910	NES13460481	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60939910 () rs orientation: forward

Symbol	Name	Function Class
Cd74	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	within coordinates
D18Mit78	DNA segment, Chr 18, Massachusetts Institute of Technology 78	1837 bp proximal
Rr405670	regulatory region 405670	1679 bp downstream
Rr405671	regulatory region 405671	881 bp downstream
Rr405672	regulatory region 405672	25 bp downstream
Tssr5344	transcription start site region 5344	833 bp upstream
Tssr151328	transcription start site region 151328	1821 bp downstream
Tssr151329	transcription start site region 151329	1750 bp downstream
Tssr151330	transcription start site region 151330	870 bp downstream
Tssr151331	transcription start site region 151331	851 bp downstream
Tssr151332	transcription start site region 151332	159 bp upstream
Tssr151333	transcription start site region 151333	697 bp upstream
Tssr151334	transcription start site region 151334	1061 bp upstream
Tssr151335	transcription start site region 151335	1070 bp upstream
Tssr151336	transcription start site region 151336	1104 bp upstream
Tssr151337	transcription start site region 151337	1158 bp upstream
Tssr151338	transcription start site region 151338	1214 bp upstream
Tssr151339	transcription start site region 151339	1393 bp upstream
Tssr153493	transcription start site region 153493	1217 bp downstream
Tssr153494	transcription start site region 153494	1239 bp downstream
Tssr153495	transcription start site region 153495	1455 bp downstream