rs38823664 SNP Detail

Summary

• ID
  rs38823664
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:55171160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCGTTGCAT TCGCTCTATT
  CTGTACACCT TGACTAATAC ACAAAGGACA GCTTCATCTG TTACAAGGTA AATGTTAATT
  ATAGCAATAC TGAGTTATCC TGTCCTCTGT CAGGCTGGTA AAGTCCAAAC TAAGGACGAT
  TTCTGCTTGG TAATGAGGCA GTTCCATATG TAGTTGGTAA GGACTCAGAT ACCTTGTCAA
  R
  CAATTGGACA ATGTCTACCA GAATTACAAA TACATATATC CCCTCCTGCG AGGCCAGCTT
  CTTGAAATGC GCTTGCATCT GTAAAATGAA AGGTTATCTG TTGTGGTACT GTCTGCTTGA
  AACGACCGGA ACTAGTGTTA TTCATGTTCA TTTAAAGAAA CTGACTGCAC TGCCAGTCCT
  TCAAGATTGC TGCCAACCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52018583	NES15035385	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38823664					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52018583	NES15035385	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:55171160 () rs orientation: forward

Symbol	Name	Function Class
Nrg4	neuregulin 4	within coordinates
Rr200783	regulatory region 200783	241 bp proximal
Rr200784	regulatory region 200784	1441 bp proximal
Rr204198	regulatory region 204198	1108 bp proximal