rs38829421 SNP Detail

Summary

• ID
  rs38829421
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98156578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTCTTTT GAAATTTGTT
  TATATTTGCA CTATCATTTG CAAATTTTGG ATCACACACA CACAAAGACT TTCATGAGTG
  TTCTTTATTC TACACCAACA GAAATCTCTA ATACATTTCC ATATCTCTAG TTGGTTTTCA
  GCTACCTTCC ATTCTTCCTC CTTTCCCCTT TACTTACCTG TTTCATTATT TGCATACTGA
  Y
  ATCCTTCTCT CTGATCTATC AACTGCACTT TCTTAGCTGG ATATAGTGGC TCATGTCTGT
  AATCCCAGAA TCTAGGTAGC TGAGGATCAC AATGAGTTGG AGGCTAGCCT GGGCTACATA
  GACAGTTTCA AGAGAGCTTG ACCTACAGGA TGAGATACTG CTCCAAAGAA ACAACAGTTC
  TACCTTTTCC AACTAGCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51761469	NES14553557	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38829421					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51761469	NES14553557	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98156578 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7649	CpG island 7649	1514 bp distal
H1f7	H1.7 linker histone	1404 bp upstream
Rr311340	regulatory region 311340	1814 bp distal
Rr391174	regulatory region 391174	within coordinates
Tssr136230	transcription start site region 136230	1385 bp upstream
Tssr136231	transcription start site region 136231	1265 bp upstream