rs38829862 SNP Detail

Summary

• ID
  rs38829862
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:35290287 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAACACAGA TCCCTTAGAA
  CCAAAGGAAT CTGCCCACCA TCCTCCTGCC ATGCTCAGAC TCCATCCTCA GTCCCTACTC
  TTGGGTATGT GTGTAAGTAT ATCTCAGAAG TCTGCTCATT ACCAGGTAGA CCAGTTGGCC
  TCTGGAGGCA TCTTGAAAGT CCAGTCTAGC CTTTTCTCAG GTAACATTAT AACATAGGTC
  R
  GATATGTCTG TCTGGAAGCA ACAAGGGACA AAAAATATTG GGGTGACTCA TTTATCTTTG
  CTATTCTGTG TGGGAAGTAT ATACTTTTCT CTGAAAGTGC AGTAGAGGAT GAAAGTTCTA
  GAAGACTGTG TGTGCCTGTT CCTGCTTCAA AGTTCTAGCA TGAGCCATTC TCTCAGGATG
  ACACAGCAGG GCTCGAGGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51275691	NES13782073	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G	A	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs38829862					SNP	A	G	G	G	G	G	A	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51275691	NES13782073	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:35290287 () rs orientation: forward

Symbol	Name	Function Class
Fam180a	family with sequence similarity 180, member A	within coordinates
Rr140102	regulatory region 140102	1914 bp proximal