rs38829940 SNP Detail

Summary

• ID
  rs38829940
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:55374640 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTCTCCA AATCAATTCC
  TTAATTTACT GGCCTGCATG TCATGTGTTG TAACAGATGT TACACTTGGA TGTTTAAAGA
  TTATCAGCTG TAGTTCTAAA TGACTGAGGA TGCAAATCCT AAACCTAGAA TGTGGCTTAT
  GGTCTTGTGG CACAGGCTTC TTTTCTGAGC ACTGTGAAGC CGTGGTGGTC ATTTTAACAA
  W
  GCAGTAAGTT TGTGGTTTAG AATGATGTCA AACACGTACC CAGAGTAGGG CACATTTATG
  ATTTCATGGA TTCCTGGTGC CTAGGAACTT GCTATATCTG TTATAGCTAT GGACATAGAA
  AAGGTGGGGA TTAAAATGTT GCCATAGGAG AACTCACTAA CAGCCAAAAG AGTGGGTTTT
  TATTTAAATT TAGTGAAAAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51220898	NES14295772	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38829940					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51220898	NES14295772	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:55374640 () rs orientation: forward

Symbol	Name	Function Class
D19Mit35	DNA segment, Chr 19, Massachusetts Institute of Technology 35	1410 bp proximal
Vti1a	vesicle transport through interaction with t-SNAREs 1A	within coordinates