rs38831179 SNP Detail

Summary

• ID
  rs38831179
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:19280490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGAGCTGG GGAGCTGAGC
  TCAAGAGGAA AGGAAAGTAA GGCTCAAGGG GACGTCGAGA GAGGGAAGGC AGACTCCGAA
  GCTCCAAGAT ATCTGAGGAT CGGGATTAAA AAAAAAAAAA AAAAAAAAAA GCGAAAGGGG
  TTTAGCGAAG AGGGAAGCAG AGGCGGGGGA AGAAAAGTTG GAAAGCTACC CGCAGCAGCA
  S
  AGCAGCACGA GGCTGGGCCA CCGGGCAGAG GTGGACAACC CAGACTCAGT AACCGGTTCT
  GAAAGAAATC TGAACCGTGA GCCTTGTAGG TGTTGGGACA GCACCGCGGT GTTAGCCTTG
  CTCAGCTAAG AAGAGTCCGG AGGCAGGCGC TAGCTCTGTC CCTACCGCTC TTAACTGGGT
  CCGGTGTGTG GCCGCGACTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50916948	NES13479774	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38831179					SNP	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50916948	NES13479774	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:19280490 () rs orientation: forward

Symbol	Name	Function Class
Cpgi65	CpG island 65	within coordinates
Rr408238	regulatory region 408238	1296 bp distal
Rr408239	regulatory region 408239	within coordinates
Rr408240	regulatory region 408240	1298 bp proximal
Rr408241	regulatory region 408241	1799 bp proximal
Tfap2b	transcription factor AP-2 beta	within coordinates
Tssr6030	transcription start site region 6030	1299 bp downstream
Tssr6031	transcription start site region 6031	1272 bp downstream
Tssr6032	transcription start site region 6032	1255 bp downstream
Tssr6033	transcription start site region 6033	1233 bp downstream
Tssr6034	transcription start site region 6034	1213 bp downstream
Tssr6035	transcription start site region 6035	1177 bp downstream
Tssr6036	transcription start site region 6036	1165 bp downstream
Tssr6037	transcription start site region 6037	1140 bp downstream
Tssr6038	transcription start site region 6038	1113 bp downstream
Tssr6039	transcription start site region 6039	1089 bp downstream
Tssr6040	transcription start site region 6040	1838 bp upstream