rs38834178 SNP Detail

Summary

• ID
  rs38834178
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:125143879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGTTCAAG TGCTGGAGCC
  ATGGAGAGCT GAGTCTCCTC CTAGCAATAC TACATTTTTG ATGAAGCAGA CCCTATATAG
  AAGACTTAAG ATCTCTTGAA GCAAGTCTAT GAAGTCATTT ACCCCCATTC TCCTGAATGT
  CTAGTGACAT TCTCAGATCA ACATTTAAGA AAACTTGAAC GGTACTTGGG CAATCTGGTA
  R
  CTCCCATTTT GCAGTTAGTC TTCAAAGACT TCCCAGCTGT CCTCCTTTGC TTCCTCCCGC
  TGGGGTAACC ACCACAACCA AAAGCAATGT GTGCAGGGAA GGATTGGTTT CATCACAAAG
  CTTACAGTCC ATCATGAAGG CAGTCAGGGC AGGACTCAGG GCAGGCCTGG TACAGGAGTC
  ACGGGGGAAC ACCGTATACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss50936253	NES14269331	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs38834178					SNP	G	G	G	G	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50936253	NES14269331	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:125143879 () rs orientation: forward

Symbol	Name	Function Class
Gm45604	predicted gene 45604	859 bp upstream
Slc16a7	solute carrier family 16 (monocarboxylic acid transporters), member 7	within coordinates
Tssr96086	transcription start site region 96086	958 bp upstream
Tssr96087	transcription start site region 96087	986 bp upstream
Tssr99673	transcription start site region 99673	782 bp downstream
Tssr99674	transcription start site region 99674	795 bp downstream
Tssr99675	transcription start site region 99675	799 bp downstream
Tssr99676	transcription start site region 99676	833 bp downstream