rs38837035 SNP Detail

Summary

• ID
  rs38837035
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84936230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTC TCCAACTAAA TAAAAGCTCC
  R
  CAGCCTCATT CCGTAAGGGC TGACG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50592115	NES14063360	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	G		A	G	G	A		G
ss145375118	ENSMUSSNP5628116	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G
ss322748147	CHEV_8_86733500	CHEVERUD	SCREENING_POP	f	SNP									G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38837035					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50592115	NES14063360	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84936230 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20685	CpG island 20685	415 bp proximal
Gm26532	predicted gene, 26532	within coordinates
Mir23a	microRNA 23a	1009 bp downstream
Mir24-2	microRNA 24-2	680 bp downstream
Mir27a	microRNA 27a	843 bp downstream
Mir3074-2	microRNA 3074-2	694 bp upstream
Mirc11	microRNA cluster 11, including Mir23a through Mir24-2	680 bp distal
Rr178130	regulatory region 178130	971 bp proximal
Rr186984	regulatory region 186984	770 bp proximal
Tssr78378	transcription start site region 78378	699 bp downstream
Zswim4	zinc finger SWIM-type containing 4	1341 bp downstream