TGTTC TCCAACTAAA TAAAAGCTCC R CAGCCTCATT CCGTAAGGGC TGACG R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
C3H/HeJ |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss50592115 | NES14063360 | PERLEGEN | MM_PANEL2 | f | SNP | G | G | G | G | G | G | G | A | G | G | A | G | |||
ss145375118 | ENSMUSSNP5628116 | ENSEMBL | ENSEMBL_Sanger | f | SNP | G | G | |||||||||||||
ss322748147 | CHEV_8_86733500 | CHEVERUD | SCREENING_POP | f | SNP | G | A | |||||||||||||
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
C3H/HeJ |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
||||
rs38837035 | SNP | G | G | G | G | G | G | G | G | G | A | G | G | A | A | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss50592115 | NES14063360 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr8:84936230 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi20685 | CpG island 20685 | 415 bp proximal | ||||||
Gm26532 | predicted gene, 26532 | within coordinates | ||||||
Mir23a | microRNA 23a | 1009 bp downstream | ||||||
Mir24-2 | microRNA 24-2 | 680 bp downstream | ||||||
Mir27a | microRNA 27a | 843 bp downstream | ||||||
Mir3074-2 | microRNA 3074-2 | 694 bp upstream | ||||||
Mirc11 | microRNA cluster 11, including Mir23a through Mir24-2 | 680 bp distal | ||||||
Rr178130 | regulatory region 178130 | 971 bp proximal | ||||||
Rr186984 | regulatory region 186984 | 770 bp proximal | ||||||
Tssr78378 | transcription start site region 78378 | 699 bp downstream | ||||||
Zswim4 | zinc finger SWIM-type containing 4 | 1341 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
||
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support. |
last database update 12/17/2024 MGI 6.24 |
![]() |
|