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rs38837035 SNP Detail
Summary
  • ID
    rs38837035
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr8:84936230 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          TGTTC TCCAACTAAA TAAAAGCTCC
    R
    CAGCCTCATT CCGTAAGGGC TGACG                                      
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
C3H/HeJ
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
ss50592115 NES14063360 PERLEGEN MM_PANEL2 f SNP G G G G G G G A G G A G
ss145375118 ENSMUSSNP5628116 ENSEMBL ENSEMBL_Sanger f SNP G G
ss322748147 CHEV_8_86733500 CHEVERUD SCREENING_POP f SNP G A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
C3H/HeJ
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
rs38837035 SNP G G G G G G G G G A G G A A G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss50592115 NES14063360 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr8:84936230 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi20685 CpG island 20685 415 bp proximal
Gm26532 predicted gene, 26532 within coordinates
Mir23a microRNA 23a 1009 bp downstream
Mir24-2 microRNA 24-2 680 bp downstream
Mir27a microRNA 27a 843 bp downstream
Mir3074-2 microRNA 3074-2 694 bp upstream
Mirc11 microRNA cluster 11, including Mir23a through Mir24-2 680 bp distal
Rr178130 regulatory region 178130 971 bp proximal
Rr186984 regulatory region 186984 770 bp proximal
Tssr78378 transcription start site region 78378 699 bp downstream
Zswim4 zinc finger SWIM-type containing 4 1341 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory