rs38837364 SNP Detail

Summary

• ID
  rs38837364
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70928435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGATTGGC AAATTCATCA
  GCTCTGGCTA GGAGGAGTCA ACCAAATCAA GTGTAGAGTT AGGATGAACC ATAACATTCC
  ATCTGTCACC AAGTTCCTCC TTCTCATCAC CATGGTCACC ATTTATGAGA AAACACGTAT
  GGGGTGCCTA TTAACTGAAA GGCATCTCCA GTCTCACAAA CAGAGGCAAG GCAAAAGGCC
  Y
  TGGAGGATAC AGACATGAGA GCTTCGGCTG AAAGAACAAA CCTGGGTTCA ATTGGAAATC
  AGTTAAGAAT AGATGTGAAT GCATGGAGCT GGGTGAATGG GGAGGTGGGG AGGATCTTGT
  AGTGGTCGGG GGAGAAGAAC CATGATCAGA ATATAGTGTA AAAAATTACT ATTAATTACT
  CCTCCTCCTA CTATTACTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51673398	NES14828330	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	C	C	T	C	C	C	T	C	T	C
ss133273550	ENSMUSSNP1293466	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38837364					SNP	C	C	C	T	C	C	C	T	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51673398	NES14828330	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70928435 () rs orientation: forward

Symbol	Name	Function Class
Gm66475	predicted gene, 66475	within coordinates
Gm66915	predicted gene, 66915	197 bp upstream
Tssr61339	transcription start site region 61339	149 bp upstream