rs38841381 SNP Detail

Summary

• ID
  rs38841381
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:61327828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTCCTCC ACCTCAGGCC
  TCCATTTGCC CTCAGCTCAA GTACTCTCCA TAAAGCACTT CTAAGTTCTC CTGGACACCA
  GACTCCCAGA CATTGGGGCT ATGCGGAAGG GTTCACTTCC ATGCAAAGAG TCTTCAGCTA
  TCCCTACAGC ACCTCCTTGA GAACTCAGAA GTGAGGACAC TCACCGGTGT GTGTGGGTGG
  M
  TGGATGGGTG TTGTGGAGAG CTCGAGCCGT CGCCGTAAAT GAAGAGGCAT TAGTCCCCAA
  ACCTACTCTT TTCTGTCCTT TGCAGCTTAG GAGTTAATCC TGGTAACATG TTCTTAAATG
  TCAAGCTGCC AGAAACATCC CTGCAGAGGC TCACTGGTTT TGCTACAATG TAGCCAGAAG
  CATTAGTCTG ATGAATTCAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	NZW/LacJ	WSB/EiJ
ss50413766	NES13453163	PERLEGEN	MM_PANEL2	f	SNP	A	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	NZW/LacJ	WSB/EiJ
rs38841381					SNP	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50413766	NES13453163	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:61327828 () rs orientation: forward

Symbol	Name	Function Class
Rr354846	regulatory region 354846	629 bp distal
Rr356345	regulatory region 356345	within coordinates
Tssr153542	transcription start site region 153542	1442 bp downstream
Tssr153543	transcription start site region 153543	1608 bp downstream
Tssr153544	transcription start site region 153544	1790 bp downstream