rs38842218 SNP Detail

Summary

• ID
  rs38842218
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:21572885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCCCTCTT CTGGTGTGTC
  TGAAGACAGC TACAGTGTAC TTAAATGTAA TAATAAATAA ATCTTTTAAA AAAGAAAAGA
  TATTTATTTA CCTCAAAGGA ACTGGGAGGT TGTGAGCCCA AGATTCTCAA GGTTAGCAGC
  TCAACACCAT GGAACTGGGA CACCGTCTCT GCAGCTCAAT GCATTTCCTC ACAATGGCTA
  Y
  AGGTTCAAGT CCTGTCTTCT CACATCACAC CTAGGCAGGA AGAGCCAAAC TGTTTTCGGT
  TTCTTGATAC TTCTTTCCCA GATTCCCCTC ACATGGCTAT CTACCTCTAG CTGCAAGAGA
  GTCTGCAAAG AAGGAAATTC GACTAACAGG TCTGTATCTG GTCAGCATGG AAATGGACGA
  TCCGGATCAG CTAAGAACCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50694226	NES13603175	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		T	C	T	C		C
ss325752819	CHEV_19_21670011	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38842218					SNP	C	C	C	C	C	C	C	C	C	C	T	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50694226	NES13603175	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:21572885 () rs orientation: forward

Symbol	Name	Function Class
1110059E24Rik	RIKEN cDNA 1110059E24 gene	1792 bp downstream
Gm38486	predicted gene, 38486	within coordinates
Gm59243	predicted gene, 59243	within coordinates