rs38843157 SNP Detail

Summary

• ID
  rs38843157
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113285207 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTGTACC TATAATTGGT
  TTTGTGTTTA AAGGCACAGC AGCAGGTAGG AAATAGAAGT GAGTTGGAAT TGAATGTGTA
  GCTTGGCTGA CTTGCTGTCG ATAGATGGAC GAGAGCTGCC CATTCTTGTA GTTAAGCCTC
  AGGAGAAGGA AGGAAAGGCT GAGAGTTAGT GTTTGTCAGG GAGGTTAGGC AGGCCCTGCA
  Y
  TGGTGGTCCT AGGCACTAGT TCAAACTAGT CCTGAGAGAA ATTGGAGCGG TACCAGACTA
  AGCTGGGCTC CCTGGGGTTT GGTGCCATCT GCTGTCTCTA CTCACCCAGA AACTGAGGTG
  GGGGAGGGTT AGCCTTTGAG AACCTTGGAA CATAATGCCT AGATTTTTGT GATCATGTTT
  GTGTCCTGGC ATTCAGTAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51842512	NES14762349	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38843157					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51842512	NES14762349	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113285207 () rs orientation: forward

Symbol	Name	Function Class
Brpf1	bromodomain and PHD finger containing, 1	within coordinates
Cpgi17838	CpG island 17838	211 bp distal
Gm15492	predicted gene 15492	within coordinates
Gm43935	predicted gene, 43935	1572 bp upstream
Gm67816	predicted gene, 67816	341 bp upstream
Rr399829	regulatory region 399829	1573 bp downstream
Rr636484	regulatory region 636484	807 bp distal
Rr636485	regulatory region 636485	352 bp distal
Rr636486	regulatory region 636486	within coordinates
Rr636487	regulatory region 636487	79 bp proximal
Tssr58189	transcription start site region 58189	1269 bp downstream
Tssr58190	transcription start site region 58190	1016 bp downstream
Tssr58191	transcription start site region 58191	1000 bp downstream
Tssr58192	transcription start site region 58192	385 bp downstream
Tssr58193	transcription start site region 58193	361 bp downstream
Tssr62434	transcription start site region 62434	460 bp upstream