rs38844260 SNP Detail

Summary

• ID
  rs38844260
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:188712485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTCAGACCC TAGGATGCAT ACCACAGAAA AAGCACATGG
  CTGCACTTAT GCCAAGAGCC ACCAGGGGGC AGAAGGGCCG AGAACACAGA ACACTGTTGA
  S
  GGGTGCTTTA ACCTGGGCCT TTAAATCCAG ACCCACAGCA TACAGCATTT CCTAGCACTG
  TTGGGAGAAC ACACAGCTAC TGCTGTGGAA CTCAGCTTC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51420024	NES14449523	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	G	C	C		C	C	G	C		C
ss320190029	CHEV_1_190804167	CHEVERUD	SCREENING_POP	f	SNP											G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38844260					SNP	C	C	C	C	C	C	C	G	C	C	G	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51420024	NES14449523	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:188712485 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kctd3	potassium channel tetramerisation domain containing 3			Intron
				Noncoding-Transcript-Variant
Rr425733	regulatory region 425733			1813 bp distal
Rr425734	regulatory region 425734			within coordinates
Rr425735	regulatory region 425735			25 bp distal
Tssr15705	transcription start site region 15705			1861 bp upstream