rs38844288 SNP Detail

Summary

• ID
  rs38844288
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:20370897 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTCAGCC AGCACTCACA
  CTTCTTCACA CGAGGGGCCC AGGACCACTT ACATTTTGCC TTTAAAGAGA TTATCTAGTG
  ATATTTGTCA TAGACTGAAT GTGGTTGGGA TTAGGTGTGG TGTGTCCAAA AGAATGACAA
  CCAAGGTAAA AGTGGTCCCT CAGTCACAGC AGTCCTGTGC TCTGCAGAGG ACTGGGGCAC
  K
  GTCCATTCTG TCTCTTTGGT TTGCTTTATC AGCATTCAGG GTTCAGGAAC AGATGCCTGG
  GCCTTAGAAA TGCAGATTCT CAGGCCTTTC CTAGACTGCT GACCCAGATA TGCATGATGA
  CAAGATTCCC AGGGTATCCC CGTGTACAAC TAAGTGACAA GTGGCACCCA AGCCAGGGTG
  CACATTAGAG TCACTGTCAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51076095	NES14368667	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38844288					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51076095	NES14368667	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:20370897 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5309	CpG island 5309	1211 bp distal
Elmo1	engulfment and cell motility 1	within coordinates
Rr270988	regulatory region 270988	1697 bp distal
Rr270989	regulatory region 270989	897 bp distal
Rr281054	regulatory region 281054	896 bp distal
Rr403595	regulatory region 403595	1363 bp downstream
Tssr118580	transcription start site region 118580	1738 bp downstream
Tssr118581	transcription start site region 118581	1716 bp downstream
Tssr118582	transcription start site region 118582	1426 bp downstream
Tssr118583	transcription start site region 118583	1363 bp downstream
Tssr118584	transcription start site region 118584	1317 bp downstream
Tssr118585	transcription start site region 118585	1300 bp downstream