rs38848442 SNP Detail

Summary

• ID
  rs38848442
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:61334726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCCTGAGTA AGGTAGTATC TGTGTCTATT AGTTACATCA
  AGATTTTTCA GAGACTCCAT GGTGGTATGT AGCAGGCATT TGCTTCCACA GCACTTCTCA
  S
  AGTGTCTAAC CTAAGTTTGT GAAAATGTGA AAATTTTTCT TAGTCTCTGT CACAAGCTGA
  GATTGAATCT TGTATCTTCT TTGCAGAAGA CATATTCCA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51490013	NES13960084	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C		C	G	C	C	G	C
ss144742946	ENSMUSSNP1742304	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38848442					SNP	C	C	C	C	C	C	C	G	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51490013	NES13960084	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:61334726 () rs orientation: forward

Symbol	Name	Function Class
Gm72252	predicted gene, 72252	1157 bp downstream
Mir344d-1	microRNA 344d-1	1786 bp upstream
Mir344d-2	microRNA 344d-2	294 bp downstream