rs38849812 SNP Detail

Summary

• ID
  rs38849812
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:51728303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGAGGAA GGTTCCTAAA
  GCTTAGAACC CCACCTCATT TCTAGATTCG CATATTTTCT CTTCCATCCA CTACCTTCCC
  CCGAGCTTCC CCAGATACTC TAAGTCATGG ATCTTATGCA GAAATAAACT TACGGCTGTG
  TCCTATGGCT TCTTGGGTTC ACGCTGAACT CTGCCTAAGA GTTTTACCCC AGTTCTGCAA
  R
  CCCAGGTAAA GTTAACACAC GCTAACACAG TAAATCTATT GAGAATGCAC TTGGCAAACG
  CCCCTCCGGG AAGCCAAGGT GTTTCCTTTC CCCTCACTCC TCTCCCTAGA GCCCCAAACA
  GAACCCTAAA TCCTTCCCAT CACAACTGTC ATTCGGTTGT AACCCCTCCT CTCCTGAGCC
  TCTAAAAGCC AGACCACGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51665662	NES14579638	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38849812					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51665662	NES14579638	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:51728303 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7083	CpG island 7083	127 bp proximal
Eif3h	eukaryotic translation initiation factor 3, subunit H	within coordinates
Rr311732	regulatory region 311732	within coordinates
Rr404375	regulatory region 404375	538 bp upstream
Tssr134286	transcription start site region 134286	541 bp downstream
Tssr134287	transcription start site region 134287	591 bp downstream