rs38854574 SNP Detail

Summary

• ID
  rs38854574
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:26339637 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGTGGTTAA GGGACTCTTG ATCCCTGAGC CTCTCATTGG
  CTTTCCCATC AGATCTTGAG GTGATGTAAC ACAAGGAAGT GTGCCTCCTG GGACTGTTGC
  Y
  GGGTGACCAT GACATCATAG ATTAGCCCAA CAGTGTCTTT CTCAAGATGT CTCAAACATT
  GCTAGACAGT TTAAATCAGA AGGAGTTGAC GGAAACGTCA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50513445	NES14088486	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38854574					SNP	C	C	C	C	C	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50513445	NES14088486	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:26339637 () rs orientation: forward

Symbol	Name	Function Class
Ash2l	ASH2 like histone lysine methyltransferase complex subunit	1915 bp upstream
Kcnu1	potassium channel, subfamily U, member 1	14 bp upstream
Tssr76727	transcription start site region 76727	1 bp upstream
Tssr76728	transcription start site region 76728	9 bp upstream
Tssr76729	transcription start site region 76729	29 bp upstream
Tssr76730	transcription start site region 76730	51 bp upstream
Tssr76731	transcription start site region 76731	63 bp upstream
Tssr80738	transcription start site region 80738	1933 bp upstream
Tssr80739	transcription start site region 80739	1911 bp upstream
Tssr80740	transcription start site region 80740	1893 bp upstream