rs38859733 SNP Detail

Summary

• ID
  rs38859733
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:69540632 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAG AACAACAATC AATTTACTGT
  R
  TTGTTCGTTT CTCACAGGCT GGTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50565157	NES14071395	PERLEGEN	MM_PANEL2	f	SNP		G	A	A	A	G		A	A		G	G	A	G		G
ss145091509	ENSMUSSNP1653484	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G					A
ss322693710	CHEV_8_71611879	CHEVERUD	SCREENING_POP	f	SNP										A					A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38859733					SNP	A	G	A	A	A	G	A	A	A	A	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50565157	NES14071395	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:69540632 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atp6v1b2	ATPase, H+ transporting, lysosomal V1 subunit B2			756 bp upstream
Cpgi20406	CpG island 20406			523 bp proximal
Rr400869	regulatory region 400869			506 bp upstream
Rr664484	regulatory region 664484			176 bp proximal
Rr664485	regulatory region 664485			1232 bp proximal
Slc18a1	solute carrier family 18 (vesicular monoamine), member 1			Intron
				Noncoding-Transcript-Variant
Tssr77656	transcription start site region 77656			736 bp upstream
Tssr77657	transcription start site region 77657			753 bp upstream
Tssr77658	transcription start site region 77658			773 bp upstream
Tssr81518	transcription start site region 81518			1220 bp downstream