rs38861074 SNP Detail

Summary

• ID
  rs38861074
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131672729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAGAGGTC CCAAGGCATC
  CTTGGGCAGT GTCTCTACTT CTGGAAAACA GCCCAGAGGT TCTCCAGGCT GGGCCAAGCA
  AATCTGTTAT CATCGTGACA CCAACTATTC AGTTGAGCTT AGGCCTGTTA GGTGAGAATG
  CCTGGATGGG TCCCTTAAAG TAGCAAAGCC TTCCCCACCC TGAAATAGGG CAGACTGGGA
  R
  AGGATTTTTC TCCCTTAGTG TTTTTACTCA AAGATGATCC TCCCCCAGAG CCCCTGCCGC
  CCCCAGCAGG CTCTCAGAAC CAGCTCTGCT ACTCCACCAG GCTTTCTGGC CCCTCCCGGG
  GTCTGACCTG CCCTGAGGCT CACTCTAGGA AATCCTGATG CAAAGGTCTT TCTTTATCTC
  TTAGTACTCA GGGGCTTCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51365818	NES14471130	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38861074					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51365818	NES14471130	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131672729 () rs orientation: forward

Symbol	Name	Function Class
Rr24545	regulatory region 24545	1690 bp proximal
Rr28486	regulatory region 28486	within coordinates
Slc26a9	solute carrier family 26, member 9	within coordinates
Tssr8660	transcription start site region 8660	962 bp downstream
Tssr8661	transcription start site region 8661	796 bp downstream