rs38862538 SNP Detail

Summary

• ID
  rs38862538
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:109683092 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTCCAGG CTCCTGGCAA
  GTGGTTCTTG CAGCCATGGC AGAGACATAG AAAGTAAGTA GGAACTCTCC GACTGAGATT
  AGGAACTACT GTGATTCTGC TCATGTTTCA TTGGTCAAGC CAATGAAGGG TGGGGAGGTG
  CCCTGTAGCC ATGTCATGAG GGAGAGAACA TGTGTACAAG CATAGGCAAC CAACTATCTA
  Y
  CTGGAACACC TAAGAAGTCT ATCTTTATTC ATGTTCTTTT TTTTTTTTAA TCTCAATGTT
  CCATTTCCCA GCAAGTGGAG GGTCAACAGA ATCTGTTCTC AGAACACCAC ATGCCACTTA
  CATATATTTT TGTCCAGGAG ACATTGTCTC GTTCTGACAA AGGCTCAGAT ATCTTTTTGT
  TTCCCATTTC ATGATAACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51053001	NES14374693	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38862538					SNP	C	C	C	C	C	T	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51053001	NES14374693	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:109683092 () rs orientation: forward

Symbol	Name	Function Class
Gm60279	predicted gene, 60279	within coordinates
Mir494	microRNA 494	1256 bp downstream
Mir543	microRNA 543	600 bp upstream
Mir666	microRNA 666	427 bp upstream
Mir679	microRNA 679	1008 bp downstream
Mir1193	microRNA 1193	867 bp downstream
Mirc6	microRNA cluster 6, including Mir379 through Mir544	within coordinates
Mirc36	microRNA cluster 36, including Mir379 through Mir3072	within coordinates
Mirc45	microRNA cluster 45, including Mir666 through Mir543	427 bp proximal