rs38862893 SNP Detail

Summary

• ID
  rs38862893
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:18000740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATATTAACT AAATTCATCA
  ATAAGAGAGT GACTTACGGG TTCCACATCT AAGTATGTCC TATGCTCATC TTCATTTGGA
  TGTAAGCCTT CAATAGGTTC TGAAACATCT GGACTTGCAT GTAGGAAATG TGGAAGCGAA
  ATATACACAG GCTTTCCTGA AGACACATTT TAAAAGACAA TTGGAAATGG ATTATTTTAT
  M
  ACTCATAAAT TATTTAAAAT ATTTACTAAA GTGTGAAGCT TTTGTAGATT AAGATATAGT
  TGTTTTTGAA ATGCTGATAA AGCCAAGCTT GGTGGTGCAT GCCTTTAATC CCAGCATTAG
  GGAGGCAGAG GCAGGCAGAT TTCTGAGTTC GAGGCCAGCC TGGTCTACAG AGTGAGTTCC
  AGGATAGCCA GGGCTATACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51687593	NES14753993	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38862893					SNP	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51687593	NES14753993	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:18000740 () rs orientation: forward

Symbol	Name	Function Class
Cd36	CD36 molecule	within coordinates
Rr121714	regulatory region 121714	1299 bp distal
Tssr50146	transcription start site region 50146	267 bp upstream
Tssr50147	transcription start site region 50147	160 bp upstream
Tssr50148	transcription start site region 50148	134 bp upstream
Tssr50149	transcription start site region 50149	86 bp upstream
Tssr50150	transcription start site region 50150	60 bp upstream
Tssr50151	transcription start site region 50151	41 bp upstream
Tssr50152	transcription start site region 50152	1245 bp downstream
Tssr50153	transcription start site region 50153	1272 bp downstream
Tssr50154	transcription start site region 50154	1329 bp downstream