rs38863572 SNP Detail

Summary

• ID
  rs38863572
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:109684844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCATTTCAA CCTGTTCTTC
  TGCTTCCCAG TACCCTGTGA GCTCTTTGTT GTATTTGTCT ACATCGTAAG TCACTTCTGG
  GTGCGGGAGA GGGGGGACCT CAGAGGGCAT CATCCAGGCA CTCACACAGC TGGTTTAGGC
  TGCCCTGGAT TTTGCCACCT AGTTCTTTGA CTTTTTTTTT TTTTCTCAGC TTCAGAAGAG
  R
  ATCCTGGAAC TGAGAGAGGA GATTCTGTCT TGGAGTTTGG CACCATCCCA TTTCCCCCGA
  GTGACACTTC AGAATGACTG GCAAGGATGG TAGGCAACAT CTCAGAATCT TCAGTCTTCG
  TCCCAGGTCT TCCTGAGATC CTGAGGTAGA GGGGGTTTGG GCTGGATTGC TATGGCAGTG
  ATGAGTACTG AGCCACTCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51052973	NES14374716	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	A	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38863572					SNP	G	G	G	G	G	G	A	G	G	A	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51052973	NES14374716	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:109684844 () rs orientation: forward

Symbol	Name	Function Class
Gm59461	predicted gene, 59461	406 bp upstream
Gm60279	predicted gene, 60279	within coordinates
Mir495	microRNA 495	344 bp upstream
Mir543	microRNA 543	1077 bp downstream
Mir666	microRNA 666	1227 bp downstream
Mir667	microRNA 667	1596 bp upstream
Mirc6	microRNA cluster 6, including Mir379 through Mir544	within coordinates
Mirc36	microRNA cluster 36, including Mir379 through Mir3072	within coordinates
Mirc45	microRNA cluster 45, including Mir666 through Mir543	1077 bp distal
Tssr115176	transcription start site region 115176	409 bp upstream