rs38865995 SNP Detail

Summary

• ID
  rs38865995
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:96536309 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGCTTGA TAGCAACAAC
  TGGTACTGTA ATACAGTCCC TTAGAAGGCT TCTATCAAAA GGTTTCTCTT TGCACAGTTT
  TGATTAGCCC GTTTTGTAGA CACACAAATG GGAGTTTTAT TTTTCAATGA GTTTGGCTTT
  CTCTCTGGAC CTGTCCCTAA CCTTTCCCCT GACTATTGGA TCGCATGTCT CTTTTACTTC
  R
  TCTTTGTTGC CTATAACTCA TTTCACATTT CCATGTTGAA TTCTGATTTG AATCGGTGTC
  TTGTATCATA GGCTTTCATT GAAAAAATTT TTAAATGTGT ATTAAATATT GACTATACCC
  AAATACATAG CAGTAAACTC TGCCCGTTGA TACTGGGTGT CATATTGATT GAAGACATAT
  ACATATAAAG AAAACAGATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51778159	NES14790929	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38865995					SNP	A	A	A	A	A	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51778159	NES14790929	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:96536309 () rs orientation: forward

Symbol	Name	Function Class
Gm26011	predicted gene, 26011	1413 bp downstream
Tafa1	TAFA chemokine like family member 1	within coordinates