rs38867769 SNP Detail

Summary

• ID
  rs38867769
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:85809023 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCGTATTCT TAGTTTTAGG
  GTTAATAGAA GGTAATGTTT TGCTAAGCCC CAATGCATTC CAAAGAATTT CTACTAGTCA
  AAAGAATGTT TGATACACAG GGTGGTGACA AGTGCTCGTT AAGGGGACTA TCTTTAGATA
  AACCAGGATA GTTTTAGCTC TTAAGGGAAC TTAGTTTACA GAGGGAAAAA ATGAGCATGC
  Y
  GGGACTGTTT TCTCTCCTGT TATAGAATTA ATATGTCTTC CCAGTGAGAG ACCACTCTGC
  AATTTAGAGA TTGATAAAGG GGAATAACTC TTCAATAATA GCATGTGACT GGCTTTGGTT
  AATGTACAAA AAGGGATCAG CCTCAAACAG AAAATTTTAC TAACTTTTGT AGACTGCAAG
  CTTCTGTATT TCATACTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51034535	NES14384622	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38867769					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51034535	NES14384622	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:85809023 () rs orientation: forward

Symbol	Name	Function Class
Flvcr2	feline leukemia virus subgroup C cellular receptor 2	within coordinates
Rr261859	regulatory region 261859	1023 bp distal
Rr261860	regulatory region 261860	within coordinates
Rr261861	regulatory region 261861	578 bp proximal
Rr264621	regulatory region 264621	1353 bp distal