rs38872126 SNP Detail

Summary

• ID
  rs38872126
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43114686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCCACACC GAAGCTGCAG
  CTGACGTCAG TGTTTTCTGT GAGTAGGAGA ATGTCACCTG AGGATTCGAG TCTTGAATCC
  CCGGGGAGAA GTGAGCCCAA TGTCTGTGAG TTCTTTAACA GTCCAACCCC TTTTTTTTGT
  CCCCAACCCC ACACCCAAGA CGGCCCGGAC GCTCCTGTCA TTAGGGTCTC CTCGGACCGG
  R
  ATGCCAGTCC TGCGCTCTAC GTCACTGCGG GCAGCAATGT GACCTTGCAT TGCTCGGCCC
  CCTCGCGGCC GCCCGCGGAC ATCGCGTGGA GTCTGGCAGA CCCCACAGAG GCCGCAGTGC
  CTGCGGGGCC TCGCCTCCTG CTGCCCGCTG TGGGGCCAGG CCATGGCGGC GCTTACGCCT
  GCATCGCCGC GAACCCTCGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51478099	NES13969837	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38872126					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51478099	NES13969837	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43114686 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18932	CpG island 18932	within coordinates
Cpgi18933	CpG island 18933	900 bp proximal
Etfbl	electron transferring flavoprotein, beta polypeptide like	1675 bp downstream
Gm39000	predicted gene, 39000	within coordinates
Rr400282	regulatory region 400282	468 bp upstream
Rr645966	regulatory region 645966	398 bp distal
Rr645967	regulatory region 645967	246 bp proximal
Rr645968	regulatory region 645968	308 bp proximal
Rr645969	regulatory region 645969	316 bp proximal
Rr645970	regulatory region 645970	1008 bp proximal
Rr645971	regulatory region 645971	1315 bp proximal
Tssr66010	transcription start site region 66010	746 bp upstream
Tssr72134	transcription start site region 72134	1010 bp upstream
Tssr72135	transcription start site region 72135	301 bp downstream
Vsig10l	V-set and immunoglobulin domain containing 10 like	within coordinates