rs38873133 SNP Detail

Summary

• ID
  rs38873133
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:18709703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTCTATTC ATCTGGACAA
  TATTTTTGTC TTAAAATCTA CTTGGACATG TCATGGCAGA ATCCTACTTC AGTTTCTTCC
  CTGTAAAGCG AAGTTATATT TGGATATAAA AGCAGGTTTT TGATGAGAGA CGTGAAGCCC
  CTTCTTGTCC TGGGTGGGAT GCTTCACTCT GCACAGTTTT GTGGCTGGTG TTCGTCCTTC
  R
  AACATTTTCA TGCTTCTAAG TGACAGTGTA CAGGTACAGC AGTTAACACA GTGGGCATGA
  TGCACTTGTA CCAAATGAAT GATCAGCGCT CATCTCCAGT GCAGGGCCTC TATATTTCTG
  GTTGGTTCCG TTTGGCTCCA AGGAAAGCAG GAATAGGTTA TATCTGTTTG GGATCATTTT
  GGTGATCAGT GACAGAACTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss50685040	NES13607324	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs38873133					SNP	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50685040	NES13607324	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:18709703 () rs orientation: forward

Symbol	Name	Function Class
Gm23238	predicted gene, 23238	402 bp upstream
Gm50202	predicted gene, 50202	within coordinates
Gm59201	predicted gene, 59201	974 bp upstream
Rr544949	regulatory region 544949	985 bp distal
Rr544950	regulatory region 544950	884 bp distal
Rr544951	regulatory region 544951	383 bp proximal
Tssr155454	transcription start site region 155454	1722 bp downstream
Tssr155455	transcription start site region 155455	1690 bp downstream
Tssr155456	transcription start site region 155456	1650 bp downstream
Tssr155457	transcription start site region 155457	899 bp downstream
Tssr155458	transcription start site region 155458	401 bp upstream