rs38878994 SNP Detail

Summary

• ID
  rs38878994
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48530806 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTCTCAG AGCTATGTGG
  TTCCTGGGCT CCTGTGTCTC AGGACGCTCT TCTATTGGGA CACTGTCCTA CCTCTGAGCT
  GTGTGGTTCC TAGGCTACCA TGTCTACCAT TGGGACACTC TCTCTGCTAA GAGTTGTGCG
  GTTCTTGGGG TTCCACACCT TCCTAGAAGG AACATTTATA GCTTCTAATC TTAAAATAGA
  M
  TCAGGCTGGT CCATCACATG GAGAAGTTCA AGGGAGATCA AATGGATACC GGGCACCATT
  TGACGGATTA GAAAAGCTAG GTCACCACTG GCCTGCAGCC TAGCACACTG AACGTCATCA
  AACACGTATT CATTAAGGAC TTTGCACTGT GATACAGTGC AAAGATGTGA ACAACAACAA
  AACTGTGCCT ATACTTAGCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51307143	NES13774485	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38878994					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51307143	NES13774485	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48530806 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17370	CpG island 17370	585 bp proximal
Gm67220	predicted gene, 67220	within coordinates
Gm67227	predicted gene, 67227	132 bp downstream
Lrrc61	leucine rich repeat containing 61	926 bp upstream
Rr399635	regulatory region 399635	646 bp upstream
Rr629686	regulatory region 629686	654 bp distal
Rr629687	regulatory region 629687	within coordinates
Rr629688	regulatory region 629688	891 bp proximal
Rr629689	regulatory region 629689	944 bp proximal
Tssr56137	transcription start site region 56137	904 bp upstream
Tssr56138	transcription start site region 56138	1058 bp upstream
Tssr60734	transcription start site region 60734	785 bp downstream
Tssr60735	transcription start site region 60735	802 bp downstream
Tssr60736	transcription start site region 60736	845 bp downstream