rs38880378 SNP Detail

Summary

• ID
  rs38880378
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:70704256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGACTACT TTCATCCTCA
  GATTCTAGTC AGGGAGACAG CACGGAAGGA CTCAATGTCT GCAAGTAGTG GAGGCTGCAA
  GCTAGCAGGA ATGCTGGGAG TTGGGCTGGC TCACTCTCTT CTTAACTTCA GAGTGCTAAC
  CCGTGGCATT TCCCCCTCTC TTTGGCATTC CTCCCTGCTG GGCAGGACCC ACTGTGGGAA
  Y
  GTACTGCAGC CTTACCTGAA GGACAACAGC GGTAGCCACG GCTCCCCCAC CAGCGGCATG
  CTGCACGGGG TCTTCTTCAG CTGCAACACG GAGTTCAACA CAGGCCAGCC CCCGCAGGAC
  TCCCCTTACG GCCGCTGGCG CTTCCAGATC CCTGCCCAGC GCCTCTTCAA CCCCAGCACC
  AACCTCTACT TTGCGGACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51530290	NES14627569	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38880378					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51530290	NES14627569	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70704256 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6694	CpG island 6694	50 bp proximal
Phyhip	phytanoyl-CoA hydroxylase interacting protein	within coordinates
Rr290302	regulatory region 290302	345 bp proximal
Tssr4470	transcription start site region 4470	195 bp downstream
Tssr126423	transcription start site region 126423	349 bp downstream
Tssr126424	transcription start site region 126424	275 bp downstream
Tssr126425	transcription start site region 126425	219 bp downstream
Tssr126426	transcription start site region 126426	83 bp downstream
Tssr126427	transcription start site region 126427	4 bp upstream
Tssr126428	transcription start site region 126428	37 bp upstream
Tssr126429	transcription start site region 126429	796 bp upstream
Tssr126430	transcription start site region 126430	865 bp upstream
Tssr126431	transcription start site region 126431	1019 bp upstream
Tssr126432	transcription start site region 126432	1053 bp upstream