rs38880856 SNP Detail

Summary

• ID
  rs38880856
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60659950 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAAG GACCAAAGCA AGAAGACTGT
  R
  ATAGGTTGAC TTGAGTGGCA AATGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50418796	NES13463009	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G	A	G	G	A	A	G		G	G	A	G		A
ss147246212	ENSMUSSNP6548621	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G
ss325639830	CHEV_18_60686532	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38880856					SNP	G	G	G	A	G	A	G	G	A	A	G	A	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50418796	NES13463009	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60659950 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10090	CpG island 10090	157 bp distal
Dctn4	dynactin 4	within coordinates
Gm58902	predicted gene, 58902	451 bp upstream
Gm58903	predicted gene, 58903	1544 bp downstream
Rr351670	regulatory region 351670	1841 bp proximal
Rr352957	regulatory region 352957	within coordinates
Tssr151313	transcription start site region 151313	644 bp downstream
Tssr153448	transcription start site region 153448	892 bp upstream
Tssr153449	transcription start site region 153449	799 bp upstream
Tssr153450	transcription start site region 153450	775 bp upstream