rs38881442 SNP Detail

Summary

• ID
  rs38881442
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:19917899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTGTACCT GTGCTGATAC
  TCAATTGTCC AACAGTGCTT ATCACTTTGA AGACGTAAAG GAACCGAATC TACTTGTAAC
  AGACCCATTT GCTTAATCGT TTGAATAAAA CTTAAACAAA AGACAAAATT TTGGCTCTTA
  CTAAGAAATA GAAATTTTTT TTTATCAGCT CAACTCAGCT AGAGAAAGGA AAATAACTAT
  M
  CACAGAAACA GTTTTCAACC AATTATAAGC ATCTCCATTT TTAAGTCAAA CTAATTCATA
  AAACATAAAA TCTGGGTCAC AGCTTAGATG TAGATGTATT AATCTGACAA TCTTTATTTT
  TTTTCCAAAT AAAGTGTGTT CCTGGAATCT GTATGCAAAA GTATGTTCCC ATAGAAACGG
  TGTTATGTTT AGAGGTTTGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51072279	NES14365097	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38881442					SNP	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51072279	NES14365097	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:19917899 () rs orientation: forward

Symbol	Name	Function Class
Gpr141b	G protein-coupled receptor 141B	778 bp upstream
Tssr121608	transcription start site region 121608	974 bp upstream
Tssr121609	transcription start site region 121609	914 bp upstream
Tssr121610	transcription start site region 121610	775 bp upstream