rs38883970 SNP Detail

Summary

• ID
  rs38883970
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123128004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACCTGCCA TATGGAGGAG
  GCATCTGAGG GGCTCAGAAA GAAATTACCT CAGCACTGTA TCTGTACAGA CTGCATAACT
  TTTAAACTCC CGGGGCTGAA ATAATAATAT GGAGACACAC GCACAGGTAC AGGAAATACA
  GCCAGTCCAC AGCCTTTTCA GACTGCAGCT GACCGGAAGA AAGCCTTTGG TTCATTCATT
  Y
  GGATAGCCTC GGTAGTACAG CCCTGAAATA GAAGTTGGGC TTTTAAAGAG AAAGGAAAAA
  AAGTCTCTAC ACTCGCTGAG AAGAGATAAA TCGATACACA GGAGGGAATA GAGAATCGGA
  TTCAGCGTCT CTAATGCAGG CAGGCAAAAG GTAAGCCTCT CTCGTGTGGC AGTTTAAGAG
  AAAAGTGGTG GTTGTTTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51195114	NES13813429	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38883970					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51195114	NES13813429	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123128004 () rs orientation: forward

Symbol	Name	Function Class
A930024E05Rik	RIKEN cDNA A930024E05 gene	within coordinates
Cpgi16565	CpG island 16565	1212 bp distal
Cpgi16566	CpG island 16566	408 bp distal
Gm44574	predicted gene 44574	within coordinates
Gm73435	predicted gene, 73435	865 bp upstream
Kdm2b	lysine (K)-specific demethylase 2B	671 bp upstream
Rr620030	regulatory region 620030	1419 bp distal
Rr620031	regulatory region 620031	918 bp distal
Rr620032	regulatory region 620032	793 bp distal
Rr620033	regulatory region 620033	646 bp distal
Rr620034	regulatory region 620034	145 bp distal
Rr620035	regulatory region 620035	within coordinates
Rr620036	regulatory region 620036	375 bp proximal
Rr620037	regulatory region 620037	876 bp proximal
Tssr48730	transcription start site region 48730	689 bp downstream
Tssr48731	transcription start site region 48731	660 bp downstream
Tssr48732	transcription start site region 48732	626 bp downstream
Tssr48733	transcription start site region 48733	575 bp downstream
Tssr48734	transcription start site region 48734	329 bp downstream
Tssr48735	transcription start site region 48735	202 bp downstream
Tssr48736	transcription start site region 48736	179 bp downstream
Tssr48737	transcription start site region 48737	within coordinates
Tssr48738	transcription start site region 48738	817 bp upstream
Tssr48739	transcription start site region 48739	834 bp upstream
Tssr48740	transcription start site region 48740	849 bp upstream
Tssr48741	transcription start site region 48741	914 bp upstream
Tssr53169	transcription start site region 53169	1415 bp upstream
Tssr53170	transcription start site region 53170	1236 bp upstream
Tssr53171	transcription start site region 53171	861 bp upstream
Tssr53172	transcription start site region 53172	830 bp upstream
Tssr53173	transcription start site region 53173	661 bp upstream
Tssr53174	transcription start site region 53174	603 bp upstream
Tssr53175	transcription start site region 53175	344 bp downstream
Tssr53176	transcription start site region 53176	463 bp downstream
Tssr53177	transcription start site region 53177	519 bp downstream
Tssr53178	transcription start site region 53178	536 bp downstream
Tssr53179	transcription start site region 53179	577 bp downstream
Tssr53180	transcription start site region 53180	592 bp downstream