rs38889760 SNP Detail

Summary

• ID
  rs38889760
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:37524322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTCAAGC TTTGGCTTCT
  AACCCACCCC CAATTGCTGG GATGCTGCCT CATCATGGTC AAAATACAAT TCTGATTGTA
  TGGAAGAAGA AGCAGTCTTA AAACCATATG GTGTTTAAGG CAGGACCTGT TCTTTCAGGT
  GTGTGTCTGT GGCTTTATCT ACGTATGTGT TTTTTTTCTA TTCGATGTAT TATGTTCATG
  Y
  GTGATATGAA TGGCTTCTCA TCGTCGGTGC TTTCAGGTTT TAATAAATTT AATTTGAAGT
  TGTCCGATGT TTGCATCGCT TAGACCAACC CTTCCCTACA GAGCAAAAAT AATTTCTAGT
  TTTCACATTC GTTCTAGTTC CAGTACTCCC TCTTCCTTTC TGTGACAACC AGCATCCTAA
  ATTCTGGCAT CTTCATGTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50794301	NES13548102	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38889760					SNP	T	T	T	T	C	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50794301	NES13548102	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:37524322 () rs orientation: forward

Symbol	Name	Function Class
Exoc6	exocyst complex component 6	859 bp upstream
Gm59222	predicted gene, 59222	within coordinates
Rr364832	regulatory region 364832	306 bp distal
Rr364833	regulatory region 364833	1879 bp proximal
Tssr156225	transcription start site region 156225	735 bp upstream
Tssr156226	transcription start site region 156226	762 bp upstream
Tssr156227	transcription start site region 156227	923 bp upstream
Tssr156228	transcription start site region 156228	1121 bp upstream