rs38898452 SNP Detail

Summary

• ID
  rs38898452
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:36669535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAAAGTCT GACTGATAGA
  TTTATGGAAA TTGGGTAAAA TTTGTAAAGG AATTGTACCC AGCTTGGCAT TCTCTAATGC
  CTGTAACATT TAGTGGAGAC TCTCATTTCG TTCAACAAAA AGATACCAAG AAACAACAAC
  TCAATCAAGA TTAACACTTC TCCTCTGGGT AACATCTAAA TAAACCATTC AGGTCTGCTC
  Y
  CAGGTGTTTG TCAGTTAGCT CTGTCGTTTC TGAAAAGTTT GTTATTTATA ATTAATTTAA
  ATAATGGTAA CAAAACAGCT CCAACAACAG CAGAACAGAA GCTTTGAGTC AAAGATTTCC
  TCTATAGCAA CTCAATGGGG TTACTAACAT AATTCTATCA ATGAGAGGTT CATCACAAAT
  CAAATATATG CCATGAAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50982701	NES14415577	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38898452					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50982701	NES14415577	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:36669535 () rs orientation: forward

Symbol	Name	Function Class
Crppa	CDP-L-ribitol pyrophosphorylase A	within coordinates
Gm61133	predicted gene, 61133	1519 bp downstream