rs38899584 SNP Detail

Summary

• ID
  rs38899584
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72345657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTATCAGG GATGGAGCAA
  TGGCTCGGTA GGGGGCCCTG CTGCTCTTTT GGAGGGCCCA GCACCCACGT TAGGCAACTT
  GCTACCGACT GAGGATGGTA GAGGGGCACC ATCCCTCAGT CCACTGCAGT GACAAGTCCG
  AGCTTATTGG GGTTCCTTGG GGCTTTAGCT GGGCTCCAGA CCGCAGAGAT TAGCTCCCTT
  M
  GGATGTAAAC GGCTCCCGCT AGGGCAAAGC GTCCGAACTT CGCGCTTTTG GCTTGGTCCT
  ATGGAAGGAG CGCTCCTGCC TGGCAACGAA GACTCTCCGT GCTGATTGGA TATTGTGCCA
  GCCAATGGGA GGCCGCGTCC CTCTTGGGCG GGCGGTGCAT TTTTGGCGGT TGCCGGGACA
  CAGCTTAAAC TTAACCCAGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50742792	NES14240558	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38899584					SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50742792	NES14240558	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72345657 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22015	CpG island 22015	within coordinates
Mns1	meiosis-specific nuclear structural protein 1	within coordinates
Rr401506	regulatory region 401506	3 bp upstream
Rr682742	regulatory region 682742	within coordinates
Rr682743	regulatory region 682743	171 bp proximal
Rr682744	regulatory region 682744	1826 bp proximal
Tssr85997	transcription start site region 85997	359 bp downstream
Tssr85998	transcription start site region 85998	144 bp upstream
Tssr85999	transcription start site region 85999	159 bp upstream
Tssr86000	transcription start site region 86000	204 bp upstream
Tssr86001	transcription start site region 86001	234 bp upstream
Tssr86002	transcription start site region 86002	468 bp upstream