rs38902115 SNP Detail

Summary

• ID
  rs38902115
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:11687122 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTCTGTAGA CCAGGCTGGC CTTGAACTCA GAAATCCTCC
  TGCTTCTGCT GGGATTAAAG GCGAGCACCA CCACCTCCTG GCTATAAAAT TTGAAAATCA
  Y
  ACTGAGCCAT TAAGGAGTAG ACACTATTCA TGGAAGTTTT ACTTTTTTTT TTTTTTTTTT
  TTGGTTTTTT TCGAGACAGG GTTTCTCTGT ATAGCCCTGG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss50505149	NES14103342	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs38902115					SNP	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50505149	NES14103342	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:11687122 () rs orientation: forward

Symbol	Name	Function Class
Ankrd10	ankyrin repeat domain 10	1365 bp upstream
Cpgi20087	CpG island 20087	455 bp distal
Gm45592	predicted gene 45592	160 bp upstream
Gm64331	predicted gene, 64331	within coordinates
Mir7238	microRNA 7238	1386 bp upstream
Rr186041	regulatory region 186041	121 bp distal
Rr400761	regulatory region 400761	1104 bp downstream
Tssr80391	transcription start site region 80391	1477 bp upstream
Tssr80392	transcription start site region 80392	1399 bp upstream
Tssr80393	transcription start site region 80393	1379 bp upstream
Tssr80394	transcription start site region 80394	1357 bp upstream