rs38903774 SNP Detail

Summary

• ID
  rs38903774
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:33190739 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCTAGCAA AGTGTAAAAC
  TCTCAGTGGA GCTGGTGACT CATCTACAAC GCCGTTCCTT CTCCGGTCCG TGTAGCCCAT
  CATGAGCCTT AGAGAGCCTG GACAGTCCCA GTGCCACCTC TCGGCTATTT TCCAGGCAGG
  TTGTATTAAG AAATCTACAA TGCCTGTGAT GTGAATAGCA GAAAGAAGAG GTGCAGTTGT
  R
  CAGTGCATTG CGGCAGCACT GGCCAGGCGT TTGATATCTA GGGGGTGGGG GAAAACAATG
  GGAAGGAGCT TCCCTGATGG ACTCAATTTC ATAATCCATG AACTGGCAAT ATGAGCTGTC
  TGTAGTATTC TGCCTAAGCA CCAAGCAGCC CTCGATTTGG AGTAGGAAAG CAACAGCCTA
  CAAGTAACCA GGCAGCAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss50968099	NES14414684	PERLEGEN	MM_PANEL2	f	SNP	A			G	G	A	A	A	A	G	A
ss137582661	ENSMUSSNP2649947	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs38903774					SNP	A	A	G	G	G	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50968099	NES14414684	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:33190739 () rs orientation: forward

Symbol	Name	Function Class
F730043M19Rik	RIKEN cDNA F730043M19 gene	within coordinates
Gm16267	predicted gene 16267	1101 bp downstream
Rr256081	regulatory region 256081	139 bp distal
Rr256082	regulatory region 256082	862 bp proximal
Rr260246	regulatory region 260246	1139 bp distal
Rr263299	regulatory region 263299	1058 bp proximal