rs38904284 SNP Detail

Summary

• ID
  rs38904284
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:113365933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGATACACG GAGTTCAGCC
  TCCGCGTGGA AGGCGACCCT GACTTCTATA AGCCAGGAAG CAGCTACCGA GGTGAGTGGA
  ATGGCGTTGG GGACCGGAGA TCTAGGAACC CCTAGGGCAC TGACCCGAGC AAGGCTGGAG
  CCGGGAGCGC AGTCCCCGAG TGTACCACGT CTGCGCATCC CAGCCCGGGG CCGTGACCTG
  R
  CTGCCCTGAG CCCCTTAGCT GCCAGCTCTA TACTATACCC AACAAGACAG TGTCGGGGGA
  GGAGGGGGCC GTCGGGGAGG CTACAGGCAG GAGAGACAGC CCCGGTCTCC AACGCAGGGT
  TCCCGAGCCG GGGAATACAG CCGAGCCACA CATCACACCA GCCTGGCTGG GAGGGAGCCC
  GACTTCGCTC CAGCTGTTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50460407	NES14119730	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38904284					SNP	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50460407	NES14119730	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:113365933 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19594	CpG island 19594	within coordinates
Rr653859	regulatory region 653859	512 bp distal
Rr653860	regulatory region 653860	993 bp proximal
Rr653861	regulatory region 653861	1956 bp proximal
Spon1	spondin 1, (f-spondin) extracellular matrix protein	within coordinates
Tssr68625	transcription start site region 68625	901 bp downstream
Tssr68626	transcription start site region 68626	849 bp downstream
Tssr68627	transcription start site region 68627	785 bp downstream
Tssr68628	transcription start site region 68628	657 bp downstream
Tssr68629	transcription start site region 68629	633 bp downstream
Tssr68630	transcription start site region 68630	598 bp downstream
Tssr68631	transcription start site region 68631	497 bp downstream
Tssr68632	transcription start site region 68632	441 bp downstream