rs38904725 SNP Detail

Summary

• ID
  rs38904725
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:73359680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGAGGTTTT GAAATCACTT GTTTCTTCAT GTAGGAAGTG
  ACCATAAGCA TTGCAAAAGG GTTTTTTTTT TTTTGAAAGA AAAATAAGTC ATGTGTGCTT
  Y
  TGCCGTGGGA GTGTGCCCAG GAGAGTCTCC TCTGTGTCTG GATGCAGTAA GCCTGCTCAT
  AATGTTTCCG TCTATCAGAG TGGGCTTGTC CTCTGCCCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51712752	NES14567242	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T	C	C	T	T	C	T	C	C
ss148110688	ENSMUSSNP5621402	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38904725					SNP	C	C	T	T	T	T	T	C	C	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51712752	NES14567242	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:73359680 () rs orientation: forward

Symbol	Name	Function Class
Gm63120	predicted gene, 63120	within coordinates
Rr504083	regulatory region 504083	1333 bp distal
Tssr4621	transcription start site region 4621	within coordinates
Tssr4622	transcription start site region 4622	53 bp upstream
Tssr131529	transcription start site region 131529	3 bp upstream
Tssr134702	transcription start site region 134702	553 bp upstream
Tssr134703	transcription start site region 134703	513 bp upstream
Tssr134704	transcription start site region 134704	498 bp upstream
Tssr134705	transcription start site region 134705	489 bp upstream