rs38904999 SNP Detail

Summary

• ID
  rs38904999
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:129206380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTTACAGA GGCAAAAATG
  ACAGTTTAAA TTCCAGAGAT GCAATTGCTT TAAATAACTT TGAATCTCTA AAGGGGTTTT
  CTCAGGGTAA CAACTGTAGG TTACACCAGC GTCTGGAAAT CACATTCATT TCCATTTAAG
  GGTATGCTGA CATCCTTTAG AATATACACT TCTCATTGAG GGTAGCTCAG CTGTTCTTGT
  Y
  TGCTGGCCCC ATGATCTGAA GCTGGAGAAA GAGAGAGAGA GAGAGGAGAA AGAGAGAGAG
  AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGGGAG AGGGAGAGAG
  GGAGGGAGAG AGAGAGTTGA AGATCTCATC TGTTCAAAAT TGCCAGACCT GAAGAAGGAG
  ATCTTCTCAT TTATTCATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss51418737	NES13704011	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs38904999					SNP	T	T	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51418737	NES13704011	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:129206380 () rs orientation: forward

Symbol	Name	Function Class
Gm38906	predicted gene, 38906	1654 bp downstream
Gm47861	predicted gene, 47861	within coordinates
Rr399972	regulatory region 399972	within coordinates
Tssr59119	transcription start site region 59119	34 bp downstream
Tssr59120	transcription start site region 59120	2 bp downstream
Tssr59121	transcription start site region 59121	1085 bp upstream
Tssr59122	transcription start site region 59122	1119 bp upstream
Tssr59123	transcription start site region 59123	1178 bp upstream
Tssr63549	transcription start site region 63549	298 bp upstream
Tssr63550	transcription start site region 63550	172 bp upstream
Tssr63551	transcription start site region 63551	845 bp downstream