rs38907372 SNP Detail

Summary

• ID
  rs38907372
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:17103031 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGCCTCTA AATTCTTTAG
  CACTAGAGGA AGTTGCTGGT TTGAGCAGCC AATCAAGGAA CATCGAGAGA CAAGGTCAAG
  CTGGTCTAGA TGCAGTTCCA ACCCAGGCGG CCACCCACGA CAATGAATGG GAAATGCTTT
  CGCCACAGCT CTCCCGGAAA AACAGGAACC CTCCACAGGA AATGGAAGAA GAGACACAGT
  K
  CCCTGAGCCT GGACCCAGAA AGCCAAGACT GAAAGGGTAA GCAAAACACT AGATTTATTT
  TACATATATA TAAAAAATAT TCTATTTAGA AATCAGAGAA ATACTGAGAG GGTTTGAAAC
  ATGAGGATAC CAGGGTCAGG AGGTCTCTTC TGACATTTAT TTTTAATTAA TTAATTAATT
  AATTTTGGTT TTTCGAGACA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50627368	NES13609109	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38907372					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50627368	NES13609109	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:17103031 () rs orientation: forward

Symbol	Name	Function Class
Prune2	prune homolog 2	within coordinates
Tssr155419	transcription start site region 155419	within coordinates
Tssr158489	transcription start site region 158489	188 bp upstream
Tssr158490	transcription start site region 158490	125 bp upstream
Tssr158491	transcription start site region 158491	69 bp upstream