rs38914013 SNP Detail

Summary

• ID
  rs38914013
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:4251777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGAGTCCC AGCAGCTACT
  ACGACTGCCT AAAGTTCCCT TCCCGCGCAC CGTCCCCTCC CCGCTGCCGG CCTGGCCTCC
  GCTTCCTTAT TGGTTCACCC GGGGTTTCTC CGTCACGTGA GAAAAACGTT CCTAAGCTCG
  GTGTCACGTG ATCTAGTCGG TTCATTGGGT GTGGCCCGGG TCACGTGACT GCGGAGGGCT
  K
  GCTCCTGTGT CCTTCCTCAG GTCTGATTCT CCCACCCGAA CCCGAGCCCT GCACACCCTG
  CAGAGCTCTG CAGCTCCACT GGGCTGCACT GGGCATAGGT GAAGGGCATA CTAGATGGAG
  GAGCAAGGTG TCTGCACCAA GGATCGAGCT CTGGACCAGA GCCCTAACGT GGGAAGTGTA
  GACCCTCCCG GGTCGCTAAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50585406	NES13654363	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38914013					SNP	T	T	T	T	T	G	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50585406	NES13654363	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:4251777 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10391	CpG island 10391	within coordinates
Gm30082	predicted gene, 30082	within coordinates
Rad9a	RAD9 checkpoint clamp component A	116 bp upstream
Rr405788	regulatory region 405788	within coordinates
Rr542669	regulatory region 542669	15 bp distal
Rr542670	regulatory region 542670	within coordinates
Rr542671	regulatory region 542671	1626 bp proximal
Rr542672	regulatory region 542672	1931 bp proximal
Tssr154297	transcription start site region 154297	19 bp upstream
Tssr157469	transcription start site region 157469	353 bp upstream
Tssr157470	transcription start site region 157470	189 bp upstream
Tssr157471	transcription start site region 157471	155 bp upstream