rs38916203 SNP Detail

Summary

• ID
  rs38916203
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:68942765 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCTAGAAT CTAATTCAGG
  AAGGGCCAAG GAGATACCAG GATCTGTGGG AAGACAGACT AGGACCAGAA GAGACCCTGT
  GAGGAGCAAG AGGCATATCA AGCCCATCTT CAAAGTCAAG AACAAGCTCA CCACTTCAAA
  AATAGAGAAA ATGTTCCCAG AAAAGGCCAG AAGAAAAGAA GCATATGAAG GCGGAACTAT
  K
  TGGCTTGTTT GTATGTCCCA AATAGAGCAG CAGGCCCAGC AGCAGGCTGC ACAAAGCTCA
  CTGGCTCCTC TGGCATGGAA ATTTGTGTAT TTTCCTGAGG TGTGTGCTTT AAAAATTAAT
  CCAAAGCTTA ATTTGTGAGT TCATCAGAAA CTCCAGAACA TCCGAAGGAG ATTTGGGGGA
  ACTTTGTTCA GCCTGGCCAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50730500	NES14249519	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38916203					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50730500	NES14249519	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:68942765 () rs orientation: forward

Symbol	Name	Function Class
Rora	RAR-related orphan receptor alpha	within coordinates
Rr682107	regulatory region 682107	561 bp distal
Tssr90367	transcription start site region 90367	1184 bp upstream
Tssr90368	transcription start site region 90368	1133 bp upstream
Tssr90369	transcription start site region 90369	1015 bp upstream