rs38916997 SNP Detail

Summary

• ID
  rs38916997
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:70702972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTTGGTCC AGAGGGTGAG
  GCTGCCTGCA GGCTCGGTGG GTGGTGTAAG GAGAAAGAGG TTGTGATCCT GTAGCCAGCT
  GATCGTTCGC TTACCTCACT CTGCCTGGAC TCTTACAGAC TATGCCAAGG AACACCTTGC
  CCAGCTGCAG GAGAAGGCTG AGCAGATCGC TGGCCGCATG CTCCGCTTCT CTGTGTTCTA
  Y
  CGCAACCATC ACAAGGAGTA CTTCCAGCAT GCCAGGTAGG GCAAGTCAGA ACTGCTAGAT
  CCTTCCAGAT CCTCCTCCAC CCCAAAGTGC TGAGGCAAAA GTATAGCTAG CAAGTGTGGG
  GCTAGCCTGG GCTACTTAAT AATTTTTTAT TAAAAAAATA ATTTTTTAAG TGACTGCTAC
  TTTGGGGTTG AGACTAAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51530314	NES14627561	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38916997					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51530314	NES14627561	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70702972 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6694	CpG island 6694	1334 bp proximal
Phyhip	phytanoyl-CoA hydroxylase interacting protein	within coordinates
Rr290302	regulatory region 290302	1629 bp proximal
Tssr4470	transcription start site region 4470	1078 bp upstream
Tssr126423	transcription start site region 126423	923 bp upstream
Tssr126424	transcription start site region 126424	1007 bp upstream
Tssr126425	transcription start site region 126425	1034 bp upstream
Tssr126426	transcription start site region 126426	1191 bp upstream
Tssr126427	transcription start site region 126427	1288 bp upstream
Tssr126428	transcription start site region 126428	1321 bp upstream