rs38917014 SNP Detail

Summary

• ID
  rs38917014
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:8929801 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAACCTCA GATTCTGTAA
  TTGGTTCTTA CAGTGACAAA TAAAAAGCTG TTTTCTTCAG CTCCTCCAGG CTCAGCTATT
  CTGTGTGTGT GTGCGCGCGC GTGCGCTGCA TTTTTGTTTT GGGGGTGTTT TTGAGAGGGA
  AAATAGAGGA CAAAGGACAA TGAAGGAGGT ACAGATGGTG CTTGGTCTAG GAGCAGCTTT
  M
  TGAGACATGC AGCCGGACTG GGAGGAAGTC TGTGCCAGCT AGCCTTCTTG TGGGACTCGA
  GCTTCTCCCA TTGGGGCTGA AGTGCAAGCA TTATCTTGGT CTAGATTTGT TCCGAGCTCT
  AAGGGCTCTC CGTCTCCACA GAAGGGTGTG AGGATGTCTG CCTGTTACCT ACTTGTCCTT
  TGGATGCCAG GGAATTGGTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50609144	NES13644111	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38917014					SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50609144	NES13644111	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:8929801 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10588	CpG island 10588	1023 bp proximal
Gm59132	predicted gene, 59132	within coordinates
Mta2	metastasis-associated gene family, member 2	142 bp downstream
Rr359578	regulatory region 359578	801 bp distal
Rr363780	regulatory region 363780	within coordinates
Rr405849	regulatory region 405849	1129 bp upstream
Tssr154900	transcription start site region 154900	352 bp downstream
Tssr154901	transcription start site region 154901	1389 bp upstream
Tssr154902	transcription start site region 154902	1424 bp upstream
Tssr154903	transcription start site region 154903	1449 bp upstream
Tssr154904	transcription start site region 154904	1540 bp upstream
Tut1	terminal uridylyl transferase 1, U6 snRNA-specific	1410 bp upstream