rs38917242 SNP Detail

Summary

• ID
  rs38917242
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60741668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAGAGATC AGAGGTGAGC
  CAGGGCCATA GGGAGCAGCG GTCATCACAG CCTGGCTGTG GGACAGGCCA TGATGCCCCT
  TTTCCTAGCC TAGATCACTG AAGGCCTACA TAGAGCTCTA GACAGCAGCC CTGAATCATA
  CAGGCCTTCA AAGAAGGCTG GAGGGTAGGC AAAGAGAAGA GCTACCAGGA GTCAGGTAAG
  R
  CAGGGCAGAT CCAGAGTGGA GGAGGGGCTC AAAGCAGAGC ATTGCCTCAG GGCAGTGGGG
  TGCTGTGATT CAGGCCTCAC ATGGCCCATG TATAGCACTG CAAGCTCATC TTTTTTGTTT
  TGTTTTGTTT TTTCTTCCAC AAGGCAATCC CATAGGATAA TACTGCCGTT GCTCCTCCCG
  TTTTGTAGAT GACAGCCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50418280	NES13463306	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38917242					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50418280	NES13463306	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60741668 () rs orientation: forward

Symbol	Name	Function Class
Rr538592	regulatory region 538592	1117 bp distal
Rr538593	regulatory region 538593	586 bp proximal
Rr538594	regulatory region 538594	1499 bp proximal
Synpo	synaptopodin	within coordinates
Tssr153456	transcription start site region 153456	1462 bp downstream
Tssr153457	transcription start site region 153457	1494 bp downstream