rs38926820 SNP Detail

Summary

• ID
  rs38926820
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69619524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCAAGGCA GTGATGAGCC
  AGCACACAGA CTGAAGCCCG TCCTGCAAAA GCCCGATTAT CAGATGATTA AAAAGCTGAA
  CTCAAGGTAA TTCTTACTAC AGAGCAGCTG TGAGGAGTGT GACAGACTGC AATTGGTGGC
  TTGTCGGAGC CTGAGAAAGT CTGTGGGCTC TCCGTATAGT CTGGCTTGAC CTCAAGATGT
  Y
  TAATCCTGTT CTGTAAGGAG GAAACGTCGG CGTTTTCAAC CTTACGAATA TTAAAAACAT
  GAACCTATCA TACATTAAAG TAACGTATCA GTAAAGATGT CAAAAATCAA GAGCTGTTTA
  ATGTTTATAG TATTTTCATC AATGGGTTTA AAATCCTTCA AAAAACAGGC AGAGTGGGAG
  GCTCACGCCT TTAATCCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51017787	NES14400738	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38926820					SNP	C	C	C	C	T	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51017787	NES14400738	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69619524 () rs orientation: forward

Symbol	Name	Function Class
Rr257072	regulatory region 257072	1124 bp distal
Rr257073	regulatory region 257073	277 bp proximal
Rr257074	regulatory region 257074	1877 bp proximal
Rr403327	regulatory region 403327	1794 bp upstream