rs38928220 SNP Detail

Summary

• ID
  rs38928220
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:47448087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCACCCAA TGCTAGTTGT
  AATATTGACT TATAAGTAAC TCTTGGATAC AGGCTCCTTT AGGTAGTGAA GAGGCCCACC
  TTCATAATGA AGCAACATGT GGCAGGGGAT AGAATATAGA TTCCAGAATT TCAATTTTTA
  GGTTGGAATC TTTGACATTC AGTAATACTG AGTTTGAGCA AATTATTTGA TGTCGCTGAA
  Y
  CTGAGGTTTT TTTGTAAGAT GTAGATGGTG TCATCTCTGG GGGCTCTTGA GTTTGGGGCA
  GCAAAGTGAG ATCCTGCCTC TAAAACAAAA CAAAAAGTGC TGTATAGGCA GTCCAGTGTA
  ATAACCTATA GTGGATTTTA GTTTCTTTCC TTCTGTGGGA TAGTTCTTTA TGGTGGAGTG
  GTTTGAGAAT GGTTGGGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51653625	NES14830117	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38928220					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51653625	NES14830117	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:47448087 () rs orientation: forward

Symbol	Name	Function Class
Cul1	cullin 1	within coordinates
D6Dcr7	DNA Segment, Chr 6, Derry C. Roopenian 7	1792 bp distal
D6Mit352	DNA segment, Chr 6, Massachusetts Institute of Technology 352	1789 bp distal