rs38929468 SNP Detail

Summary

• ID
  rs38929468
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:105289059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACCAAAGC CTCGGGTGTC
  TTCTCATAAC CCCCCTACCT CGCCTTCAGT AACCATTCAT GCATTCAGTC ATTCAACAAC
  TATCTAGTGA GTGTCTATTA TGAGTGAGAT ACTGAGGCAA TGGGATTATA GCAGTGAGGA
  CCAGAGGGGA GGTCTATGCT CTCTGGGAAC TTAACCCTGC AGAGGCAATG TTTACCAGAA
  Y
  CCTTTCCTAG GCTCAGACTC TCACTTGCCA CTCAGGCATG CTCTACAATC CTGGTCTTTC
  ACATTCTTTG GTGTTCCTTC CCCTCTTCCT TCAGCCGGTC TGGGCTCTTC CTTTCTCCAT
  CTCATGCACC TGACTCCCTT AGGCCCTCCC CAGCAGGCCT TGGTTGAAGC AGTTAGTGAA
  TGTTCCTGGT GTCAGGTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51920951	NES14946570	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs38929468					SNP	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51920951	NES14946570	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:105289059 () rs orientation: forward

Symbol	Name	Function Class
Arfip2	ARF interacting protein 2	within coordinates
Cpgi19541	CpG island 19541	232 bp proximal
Gm45799	predicted gene 45799	700 bp upstream
Rr400513	regulatory region 400513	396 bp upstream
Rr652793	regulatory region 652793	within coordinates
Rr652794	regulatory region 652794	215 bp proximal
Rr652795	regulatory region 652795	454 bp proximal
Timm10b	translocase of inner mitochondrial membrane 10B	204 bp upstream
Tssr2358	transcription start site region 2358	564 bp upstream
Tssr68382	transcription start site region 68382	611 bp upstream
Tssr68383	transcription start site region 68383	670 bp upstream
Tssr68384	transcription start site region 68384	931 bp upstream
Tssr68385	transcription start site region 68385	1144 bp upstream
Tssr68386	transcription start site region 68386	1200 bp upstream
Tssr74083	transcription start site region 74083	465 bp downstream