rs38933088 SNP Detail

Summary

• ID
  rs38933088
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:59013943 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGGTGGA TTGGAGAGAC
  ACATCAACTA CAGGTGACTT CCTGAGAAGA GTGCCACAAC TACTGGGAAA AGTCTGTTCT
  TCTGAACTAG GGGTGTGTGT GTGGGGACAA TGGCATAATT TACAGTTCCT CAGTCCTTTG
  GTGTCATGGC AGATTTCATC AATTCTTCAT CTTGGGATGC TGAGGATTAT GCTGAAAATA
  R
  GACTCTTGGT TTGGGGAGAA GGCCAACTTG GGGAATAAGT TTCTTGCACA AAATGGAATA
  AGAGAGTCTT TGCAGGGCAA ACCTTCCTTG AGAAAGTAAA ACATCAGAAA GTCTGTGTCA
  CAACTTTGTC CACATTTGAC AGCACTTACT ATAAAAGCCA GAAGGAGAAA ATATGTAAAC
  ATGCCATTTC AGCAAATGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss51665172	NES14830111	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs38933088					SNP	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51665172	NES14830111	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:59013943 () rs orientation: forward

Symbol	Name	Function Class
Gm19165	predicted gene, 19165	within coordinates